Survival-associated meQTLs across different cancer types


We identified 23,432 meQTLs associated with patient overall survival across different cancer types at FDR < 0.05.


e.g., "BLCA"
e.g., "rs11600543"


Cancer type
SNP ID
SNP position (hg19)
Alleles (A/a)
log-rank test p-value
Sample size
Median survival time AA
Median survival time Aa
Median survival time aa
Dispaly
PCPG rs4820674 chr22:21298053 A/G 7.74E-5 177 12.93 31.47 25.2 KM Plot
PCPG rs4822700 chr22:21300308 T/C 7.74E-5 177 12.93 31.47 25.2 KM Plot
PCPG rs4822707 chr22:21303690 G/T 2.05E-5 178 12.93 31.68 25.2 KM Plot
PCPG rs4823962 chr22:50212566 T/C 0.000201 174 25.53 20.2 15.18 KM Plot
PCPG rs4823963 chr22:50223509 C/T 0.000153 177 25.47 24.53 15.18 KM Plot
PCPG rs483304 chr13:37499658 T/C 5.57E-5 173 56.35 24.23 25.47 KM Plot
PCPG rs4845559 chr1:153611600 A/G 0.000372 174 5.68 27.33 25.17 KM Plot
PCPG rs4848466 chr2:118524716 T/C 1.5E-5 178 25 30.33 11.65 KM Plot
PCPG rs4848468 chr2:118561373 G/C 1.77E-5 177 25.28 25.97 11.65 KM Plot
PCPG rs4849624 chr2:118535721 C/G 1.67E-5 177 24.85 30.33 11.65 KM Plot
PCPG rs4856618 chr3:80475954 T/C 0.000295 177 25.17 25.43 25.47 KM Plot
PCPG rs4856623 chr3:80584399 A/C 3.23E-5 176 19.2 24.53 27.4 KM Plot
PCPG rs4856624 chr3:80622158 A/T 8.57E-5 178 26.53 23.43 25.17 KM Plot
PCPG rs4859142 chr3:182614493 A/G 0.000212 178 25.53 27.27 11.78 KM Plot
PCPG rs4859252 chr3:182615392 T/A 1.06E-5 174 25.87 27.2 11.78 KM Plot